Associate Professor · 2022-03 –

Minsik Oh 오민식

Department of Artificial Intelligence, Myongji University, Myongji University
Machine learning for single-cell and spatial omics

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Publications 33

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Integrative evidence-knowledge marker selection enhances LLM-based cell type annotation in single-cell RNA-seq analysis

Jiyeong Shin^{† (first author)}, Soyoung Jeong, Hyun Je Kim, Minsik Oh^{* (corresponding author)}

BioData Mining2026International journalSCIEIF 7.9

scFANCL: Dual contrastive learning with false-negative correction at cell level for single-cell RNA-seq clustering

Gunho Choi^{† (first author)}, Minsik Oh^{* (corresponding author)}

BMC Genomics2026International journalSCIEIF 3.9

Annotation-free phenotype prediction using knowledge-augmented clustering from single-cell RNA sequencing data

Janghyun Noh^{† (first author)}, Yoobin Shin, Min Kim, Minsik Oh^{* (corresponding author)}

Briefings in Bioinformatics2026International journalSCIEIF 7.3

CMAgent: 단일세포 RNA-seq 주석을 위한 LLM 기반 세포 유형–마커 관계 큐레이션 에이전트

Donghoo Kim^{† (first author)}, Myeongkwan Kim^{† (first author)}, Jiyeong Shin, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2026Domestic conference

HetDrugKG: 이종 지식 그래프 기반 단일세포 약물 유도 유전자 발현 변화 예측

Seunghoo Song^{† (first author)}, Gunho Choi, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2026Domestic conference

국소 유전자 맥락과 Spot과 유전자 간 교차 어텐션을 이용한 공간 전사체 표현 학습

Myeongbin Oh^{† (first author)}, Jaeyun Park, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2026Domestic conference

전역·지역 매칭 기반 공간 전사체와 조직 이미지 정렬 자동화 프레임워크

Dongsin Kim^{† (first author)}, Jaeyun Park, Minsik Oh^{* (corresponding author)}

Outstanding Paper Award (우수논문상) · DongSin Kim

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2026Domestic conference

scRNA-seq 기반 표현형 예측을 위한 사전 학습 임베딩을 활용한 환자 단위 메타셀 구성

Yoobin Shin^{† (first author)}, Janghyun Noh, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2026Domestic conference

Ferroptosis-based therapeutic strategy targeting iron metabolism and SLC7A11 overcomes oxaliplatin resistance in patient-derived pancreatic cancer organoids

Jin Ho Choi^{† (first author)}, Kyung Min Lee, Minsik Oh, Janghyun Noh, Yooyeon Kim, Eunhye Hwang, In Rae Cho, Woo Hyun Paik, Ji Kon Ryu, Ja-lok Ku, Sang Hyub Lee^{* (corresponding author)}

Journal of Experimental & Clinical Cancer Research2026International journalSCIEIF 14.3

Machine learning based plasma proteomic analysis identifies disease differentiating biomarkers in atopic dermatitis

Jasper Roldan Go^{† (first author)}, Christine Suh-Yun Joh^{† (first author)}, Soyoung Jeong^{† (first author)}, Yoon Ji Bang, Jong Wook Jung, Jaeyun Park, Ji Hwan Moon^{* (corresponding author)}, Minsik Oh^{* (corresponding author)}, Hyun Je Kim^{* (corresponding author)}

Journal of Korean Medical Science2026Domestic journalSCIEIF 3.2

LLM 기반 세포 유형 특이적 마커 유전자 추출을 위한 자동화 접근법

Seri Oh^{† (first author)}, Jiyeong Shin, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

클라이언트 기반 GeoMx DSP 공간 전사체 데이터 분석 플랫폼

Hanjun Bae^{† (first author)}, Myeongbin Oh, Gunho Choi, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

Spatial Transcript와 H&E Whole Slide Image의 정렬 자동화 프레임워크

Dongsin Kim^{† (first author)}, Jaeyun Park, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

scRNA-seq 데이터 축소 기법을 이용한 환자 표현형 예측의 연산 경량화 분석

Yoobin Shin^{† (first author)}, Janghyun Noh, Minsik Oh^{* (corresponding author)}

Outstanding Presentation Award (우수발표논문상) · Yoobin Shin

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

Integrative multi-omic profiling in blood reveals distinct immune and metabolic signatures between ACPA-negative and ACPA-positive rheumatoid arthritis

Benjamin Hur^{† (first author)}, Vinod K. Gupta, Minsik Oh, Hu Zeng, Cynthia S. Crowson, Kenneth J. Warrington, Elena Myasoedova, Vanessa L. Kronzer, John M. Davis, Jaeyun Sung^{* (corresponding author)}

Frontiers in Immunology2025International journalSCIEIF 7.0

AMIL: Automated cell grouping framework for phenotype prediction with multiple instance learning

Janghyun Noh^{† (first author)}, Min Kim, Minsik Oh^{* (corresponding author)}

Outstanding Presentation Award (우수발표논문상) · JangHyun Noh

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

GPT-4를 활용한 마커 유전자 기반 단일세포 세포 유형 자동 주석화 모델

Jiyeong Shin^{† (first author)}, Yoobin Shin, Myeongbin Oh, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

LassoNet을 활용한 Olink 프로테오믹스 데이터 기반 질병 분류 및 바이오마커 탐지

Myeongbin Oh^{† (first author)}, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

DeepSpot-VAE: H&E 이미지 기반 Xenium 유전자 발현 복원 프레임워크

Jaeyun Park^{† (first author)}, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2025Domestic conference

Large DNA deletions occur during DNA repair at 20-fold lower frequency for base editors and prime editors than for Cas9 nucleases

Gue-Ho Hwang^{† (first author)}, Seok-Hoon Lee, Minsik Oh, Segi Kim, Omer Habib, Hyeon-Ki Jang, Heon Seok Kim, Youngkuk Kim, Chan Hyuk Kim, Sun Kim, Sangsu Bae^{* (corresponding author)}

Nature Biomedical Engineering2025International journalSCIEIF 26.3

XGBoost와 SHAP을 이용한 RNA-seq 기반 유방암 서브타입 예측 및 주요 유전자 분석

Jiyeong Shin^{† (first author)}, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2024Domestic conference

MIMIC-III 데이터를 이용한 급성호흡곤란증후군 환자의 병원 내 사망 예측: 다양한 결측 데이터 처리 전략을 적용한 머신러닝 모델의 비교 연구

Janghyun Noh^{† (first author)}, Gowoon Choi^{† (first author)}, Minsik Oh^{* (corresponding author)}

Proceedings of the KIISE Conference (한국정보과학회 학술발표논문집)2023Domestic conference

TFNetPropX: A web-based comprehensive analysis tool for exploring condition-specific RNA-seq data using transcription factor network propagation

Ji Hwan Moon^{† (first author)}, Minsik Oh^{* (corresponding author)}

Applied Sciences2023International journalSCIEIF 2.9

GOAT: Gene-level biomarker discovery from multi-omics data using graph ATtention neural network for eosinophilic asthma subtype

Dabin Jeong^{† (first author)}, Bonil Koo, Minsik Oh, Tae-Bum Kim^{* (corresponding author)}, Sun Kim^{* (corresponding author)}

Bioinformatics2023International journalSCIEIF 5.5

Adipocyte HIF2α functions as a thermostat via PKA Cα regulation in beige adipocytes

Ji Seul Han^{† (first author)}, Yong Geun Jeon, Minsik Oh, Gung Lee, Hahn Nahmgoong, Sang Mun Han, Jeehye Choi, Ye Young Kim, Kyung Cheul Shin, Jiwon Kim, Kyuri Jo, Sung Sik Choe, Eun Jung Park, Sun Kim, Jae Bum Kim^{* (corresponding author)}

Nature Communications2022International journalSCIEIF 18.1

IDEA: Integrating divisive and ensemble-agglomerate hierarchical clustering framework for arbitrary shape data

Hongryul Ahn^{† (first author)}, Inuk Jung, Heejoon Chae, Minsik Oh, Inyoung Kim, Sun Kim

IEEE International Conference on Big Data2021International conference

mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering

Hyejin Kang^{† (first author)}, Hongryul Ahn, Kyuri Jo, Minsik Oh, Sun Kim^{* (corresponding author)}

Bioinformatics2021International journalSCIEIF 5.5

Construction of condition-specific gene regulatory network using kernel canonical correlation analysis

Dabin Jeong^{† (first author)}, Sangsoo Lim, Sangseon Lee, Minsik Oh, Changyun Cho, Hyeju Seong, Woosuk Jung, Sun Kim^{* (corresponding author)}

Frontiers in Genetics2021International journalSCIEIF 3.0

Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations

Minsik Oh^{† (first author)}, Sungjoon Park, Sun Kim, Heejoon Chae^{* (corresponding author)}

Briefings in Bioinformatics2021International journalSCIEIF 7.3

DRIM: A web-based system for investigating drug response at the molecular level by condition-specific multi-omics data integration

Minsik Oh^{† (first author)}, Sungjoon Park, Sangseon Lee, Dohoon Lee, Sangsoo Lim, Dabin Jeong, Kyuri Jo, Inuk Jung, Sun Kim^{* (corresponding author)}

Frontiers in Genetics2020International journalSCIEIF 3.0

DeepFam: deep learning based alignment-free method for protein family modeling and prediction

Seokjun Seo^{† (first author)}, Minsik Oh, Youngjune Park, Sun Kim^{* (corresponding author)}

Bioinformatics2018International journalSCIEIF 5.5

miRTarVis+: Web-based interactive visual analytics tool for microRNA target predictions

Sehi L'Yi^{† (first author)}, Daekyoung Jung, Minsik Oh, Bohyoung Kim^{* (corresponding author)}, Robert J. Freishtat, Mamta Giri, Eric Hoffman, Jinwook Seo^{* (corresponding author)}

Methods2017International journalSCIEIF 3.6

Literature-based condition-specific miRNA-mRNA target prediction

Minsik Oh^{† (first author)}, Sungmin Rhee, Ji Hwan Moon, Heejoon Chae, Sunwon Lee, Jaewoo Kang, Sun Kim^{* (corresponding author)}

PLOS ONE2017International journalSCIEIF 2.8